Neuro-iX - Journal Club

DOI: 10.48550/arXiv.2209.13177

Presentation of the review article ‘Addressing fairness issues in deep learning-based medical image analysis: a systematic review’

3D medical imaging

fairness

deep learning

sensitive attributes

2024-11-18

Benoit Verreman

Presentation of MONAI Label

3D medical imaging

interactive 3D image segmentation

active learning

deep learning

DOI: 10.1016/j.media.2024.103207

2024-11-11

DOI: 10.48550/arXiv.1907.10597

Presentation of the article ‘Green AI’

computers and society

computation and language

computer vision and pattern recognition

machine learning

methodology

2024-11-04

DOI: 10.48550/arXiv.2003.08462

Presentation of the article ‘Semi-supervised few-shot learning for medical image segmentation’

segmentation model

few-shot learning

unlabeled surrogate tasks

2024-10-28

Kaveh Moradkhani

Presentation of the review article ‘EPI susceptibility correction introduces significant differences far from local areas of high distortion’

diffusion weighted imaging

preprocessing

distortion correction

quality assurance

DOI: 10.1016/j.mri.2022.05.016

2024-10-10

Sedigheh Dargahi

Presentation of the review article ‘Automated brain segmentation and volumetry in dementia diagnostics: a narrative review with emphasis on FreeSurfer’

magnetic resonance imaging

brain segmentation

volumetry

dementia

alzheimer

freesurfer

DOI: 10.3389/fnagi.2024.1459652

2024-09-23

DOI: 10.1109/TPAMI.2012.143

Presentation of the article ‘Multi-Atlas Segmentation with Joint Label Fusion’

multi-atlas

magnetic resonance imaging

segmentation

joint label fusion

2024-09-16

DOI: 10.1038/s41592-024-02237-2

Presentation of the online platform brainlife.io

magnetic resonance imaging

neuroimaging

online platform

standardization

2024-09-09

DOI: 10.48550/arXiv.2404.11732

Presentation of the article ‘Visual Prompting for Generalized Few-shot Segmentation: A Multi-scale Approach’

multiscale transformer decoder

unidirectional causal attention mechanism

2024-06-10

DOI: 10.48550/arXiv.2210.11006

Presentation of SimpleClick

vision transformer

click-based interactive image segmentation

masked autoencoder

2024-05-06

DOI: 10.1038/s41593-024-01596-5

Presentation of the MITB functional atlas of the cerebral cortex

functional atlas

cortex parcellation

magnetic resonance imaging

2024-04-15

DOI: 10.48550/arXiv.2304.05879

Presentation of FET-MRQC

quality control

fetal brain

magnetic resonance imaging

T2w

2024-03-11

DOI: 10.48550/arXiv.2401.12938

Presentation of the article ‘Neural deformation fields for template-based reconstruction of cortical surfaces from MRI’

geometric deep learning

magnetic resonance imaging

cortical surface reconstruction

brain segmentation

registration

2024-02-26

Kaveh Moradkhani

Presentation of the article ‘Semi-automatic segmentation of the fetal brain from magnetic resonance imaging’

magnetic resonance imaging

fetal brain

linear registration

nonlinear registration

volumetric reconstruction

DOI: 10.3389/fnins.2022.1027084

2024-02-12

DOI: 10.48550/arXiv.2304.12306

Presentation of the FD-NET

deep learning

echo planar imaging

reversed phase-encoding

susceptibility artifacts

unsupervised learning

DOI: 10.1002/mrm.29851

2024-02-08

Sedigheh Dargahi

Presentation of MedSAM

fondation model

medical image segmentation

2024-02-05

Website: https://torchio.readthedocs.io/

Presentation of the python library TorchIO

open-source

python library

patch-based sampling

3D medical images

2024-01-29

DOI: 10.48550/arXiv.2306.00753

Presentation of the article ‘Robust T-Loss for Medical Image Segmentation’

robust loss

medical image segmentation

noisy labels

2024-01-22

DOI: 10.48550/arXiv.2309.13377

Presentation of the conference paper ‘Learning Invariant Representations with a Nonparametric Nadaraya-Watson Head’

Nadaraya-Watson head

machine learning

nonparametric invariant representation

2024-01-15

Sukesh Adiga

Presentation of FastSurferVINN

brain segmentation

magnetic resonance imaging

resolution independence

DOI: 10.1016/j.neuroimage.2022.118933

2023-11-22

DOI: 10.48550/arXiv.2003.08934

Presentation of NeRF

scene representation

view synthesis

image-based rendering

volume rendering

3D deep learning

2023-11-15

Website: https://www.comet.com/site/

Presentation of Comet

platform

machine learning

training

2023-11-08

DOI: 10.1016/j.mri.2019.05.008

Presentation of Synb0-DisCo

conditional generative network

diffusion magnetic resonance imaging

distortion correction

echo planar imaging

image synthesis

2023-11-01

Sedigheh Dargahi

Presentation of the article ‘Boundary-weighted logit consistency improves calibration of segmentation networks’

calibration

consistency regularization

segmentation

DOI: 10.48550/arXiv.2307.08163

2023-10-25

Sukesh Adiga

Presentation of Vox2Cortex

reconstruction of cortical surface

magnetic resonance imaging

geometric deep neural network

DOI: 10.48550/arXiv.2203.09446

2023-10-18

Kaveh Moradkhani

Presentation of DARQ

deep learning

linear registration

quality control

DOI: 10.1016/j.neuroimage.2022.119266

2023-10-04

DOI: 10.1007/s11065-021-09496-2

Presentation of the review article ‘Best Practices in Structural Neuroimaging of Neurodevelopmental Disorders’

children

freesurfer

neurodevelopmental disorders

quality control

structural magnetic resonance imaging

study design

2023-09-25

DOI: 10.48550/arXiv.2007.15963

Presentation of the article ‘Disentangling Human Error from the Ground Truth in Segmentation of Medical Images’

supervised learning

medical image segmentation

convolutional neural network

2023-09-20